rs27617295 SNP Detail

Summary

• ID
  rs27617295
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148174008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGGCTG GTGGGTGTGA
  CTCCAGAAGA ATAGAAGCCA TATGGGAACC CATGAGACCC CCTGAGTGGA CACAAGATGA
  CATCTAGGTC ACAGATCCCC AGATAGGACT TTTCTTCTGG GAAGATGAGA GAAGTTGGGG
  CGGGGCAGAC CTAATTTAAT AGCCCATTTG AAGGCACAAC CCTCAGTCCC CAAGGAAGGC
  R
  AACTACAAGT CTGCCATTGT AATGGACAGC TATTCTGATT TTGTTTCTAG GCAGAGTATT
  TCTGTGATGT CCAGGCTGGC CTTGAACTTG AGAGTTTCCT GTTCTATCCT CCCAAGGGCT
  GGGATAGCAG GCATGTGCCT TTACCTGGGT CTAATTATGG TTTATTGCAT AAGTTTATTT
  AACTGTTATA AAAATTATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37805718	NES09120455	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27617295					SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805718	NES09120455	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148174008 () rs orientation: forward

Symbol	Name	Function Class
Agtrap	angiotensin II, type I receptor-associated protein	1520 bp upstream
Cpgi15288	CpG island 15288	1000 bp distal
Rr377390	regulatory region 377390	within coordinates
Rr604583	regulatory region 604583	1531 bp distal
Rr604584	regulatory region 604584	1030 bp distal
Tssr44579	transcription start site region 44579	1524 bp upstream
Tssr44580	transcription start site region 44580	1495 bp upstream
Tssr44581	transcription start site region 44581	1482 bp upstream
Tssr44582	transcription start site region 44582	361 bp upstream
Tssr44583	transcription start site region 44583	333 bp upstream