rs27616896 SNP Detail

Summary

• ID
  rs27616896
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144681669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTAT GAGAGTCAGA GGAATAGGTG
  R
  AATGTTGTGT AGCTATTTCC ACCTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37799933	NES09122276	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	G		G	G	A	G		G	G	G	G		G
ss45574915	mCV22761833	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		G
ss147841621	ENSMUSSNP6423911	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							G
ss321411046	CHEV_4_144545002	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27616896					SNP	G	G	A	G	A	G	G	A	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37799933	NES09122276	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144681669 () rs orientation: forward

Symbol	Name	Function Class
Gm42344	predicted gene, 42344	948 bp upstream
Gm69556	predicted gene, 69556	within coordinates
Rr604273	regulatory region 604273	1445 bp distal
Rr604274	regulatory region 604274	582 bp proximal