rs27615961 SNP Detail

Summary

• ID
  rs27615961
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148335856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGAAGTGC AAGTGTCCAC TTTAAAACTC TCCCCTAGAG
  TTCAGGAAGG ACTTAGGGAA AGCCTTAGTG GCTTCCACCT GCAGCCTATT GACCTACTGA
  Y
  CCATTGACCC ACTGACCCAC TGAACCTGAG GATTCAAGGC ACCTTGAGTT TGCTACTGGA
  TCCAGGAAAC TGCCAGGCCC CAGGCCATGG CTGTACATA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37804895	NES09105449	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	C	T	C	T		C	C	T	C		C
ss147998573	ENSMUSSNP901483	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss321418552	CHEV_4_147625508	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27615961					SNP	C	T	T	T	C	T	C	T	C	T	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804895	NES09105449	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148335856 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Disp3	dispatched RND transporter family member 3			Intron
				Noncoding-Transcript-Variant
Rr604634	regulatory region 604634			1797 bp distal
Rr604635	regulatory region 604635			1859 bp distal