rs27615609 SNP Detail

Summary

• ID
  rs27615609
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148519111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCATT TAAAATCTGC ACCAGAGCTC
  R
  GTGTAGCAGC TGACACAGTT CTGAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37803832	NES09117885	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A		A	G	A	G		G	G	G	G		G
ss45566924	mCV24214449	ABI	CRAMUS_MOUSE	f	SNP	A	A					A		G
ss148007348	ENSMUSSNP199228	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
ss321420391	CHEV_4_147808763	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27615609					SNP	A	A	G	A	G	A	A	A	G	A	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37803832	NES09117885	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148519111 () rs orientation: forward

Symbol	Name	Function Class
Gm69474	predicted gene, 69474	1180 bp upstream
Rr604682	regulatory region 604682	11 bp proximal
Rr604683	regulatory region 604683	1257 bp proximal
Ubiad1	UbiA prenyltransferase domain containing 1	mRNA-UTR