rs27615590 SNP Detail

Summary

• ID
  rs27615590
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148521859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGGT TTACCTTTTC TCCCAACACA
  B
  ACTCAAACTG TCAACAACCC TATGT                                      
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37803812	NES09117834	PERLEGEN	MM_PANEL2	f	SNP		T	T		C	C	C	T		C	C	T	C		C
ss45697685	mCV24214756	ABI	CRAMUS_MOUSE	f	SNP	G			C		C
ss148007423	ENSMUSSNP662496	ENSEMBL	ENSEMBL_Sanger	f	SNP						C
ss321420405	CHEV_4_147811511	CHEVERUD	SCREENING_POP	f	SNP									G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27615590					SNP	G	T	T	C	C	C	C	T	G	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37803812	NES09117834	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148521859 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr604683	regulatory region 604683			1470 bp distal
Ubiad1	UbiA prenyltransferase domain containing 1			Intron
				Noncoding-Transcript-Variant