rs27615485 SNP Detail

Summary

• ID
  rs27615485
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148544657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAGGACC AAGGCCAGCG
  AAGTCGCCAT GAGGAAGGGG TCGGGTTAAG GGAGGGAGAG AAAATATGCA GAGAGAGAAG
  AGGAGAGAGA GGGAGAGAGT GGGGCAGGTC ATTGACCTTC ATGGGCCTCC ACGTCCTAGC
  TAGTGAAGAA TACAACAGTA ATTCCTGCCT CCTGAGTGAA TAGCGTGTGA GTGCTCAGGC
  R
  CAGAGCAGAA ACCATTCTTA GGTTGTTATT GCCTCCTAGA GCTCCTCAGA GCCACTTTGG
  GAAGGAGGAG GTGTGTGTGA TACTAATACT CTAGTTGCCT ATTTTAGTTA ATGTCCCTCC
  CTGGCTTCCT ACTTGGTGAG AGTGAGACCT TGTCTCAGAG GTCTCTTGTA CTTCCTGTGG
  CGTGCTGCTT GTGTTTATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37803706	NES09117182	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27615485					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37803706	NES09117182	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148544657 () rs orientation: forward

Symbol	Name	Function Class
Mtor	mechanistic target of rapamycin kinase	Intron
Rr604688	regulatory region 604688	385 bp proximal
Rr604689	regulatory region 604689	1762 bp proximal
Tssr44608	transcription start site region 44608	1317 bp upstream