rs27615471 SNP Detail

Summary

• ID
  rs27615471
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148547237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGAGGC AGGTGAATCT
  CGGTGAGTTC GAGGCCATCC TGGTCTACAA AGTGAGTTCT AAGACAGCCA GAACGGCTAC
  ATAGAGAAAC CCTGTCTCGA AAAAAAAAAT TCATTAAATT CTTAGCATCC TTCCATTTGG
  CTGCCTTAAA TTTGAGTGCT GGTAGGGACT CTGACCTTGG CCACATGTTC TTTCTTGTCT
  R
  TACCAGATAC CCAGTACCTC CAGGACACCA TGAACCATGT CCTGAGCTGT GTCAAGAAGG
  AGAAGGAACG GACTGCGGCG TTCCAGGCCC TGGGGCTGCT TTCTGTGGCC GTGAGGTCGG
  AGTTTAAGGT CTACTTGCCC CGTGTACTTG ACATCATCCG AGCAGCGCTT CCTCCAAAGG
  ACTTTGCCCA CAAGTAAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37803692	NES09117043	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27615471					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37803692	NES09117043	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148547237 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mtor	mechanistic target of rapamycin kinase			Intron
				Splice-Site
Rr604688	regulatory region 604688			1356 bp distal
Rr604689	regulatory region 604689			797 bp distal
Rr604690	regulatory region 604690			174 bp proximal
Rr604691	regulatory region 604691			284 bp proximal
Rr604692	regulatory region 604692			706 bp proximal