rs27615338 SNP Detail

Summary

• ID
  rs27615338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:173105741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACAGCAG CTCTCTGAGT
  TCACCACCTC TGAGTAACCG CTTCCTCAAG ACATGACTCA CATCTGTCTG GGGTCACCCA
  CACCCTCCTT CCCCGTGGAG GCAGGCAGGC CAGGTGAGAC GGGTACAGAC AGAGGCGCTC
  TGGCCTGCCA GCAGTGGCTT TGGAGCCACA ACACTCCCAG AAATGCCAAA CCTACTGCGA
  Y
  GACAGGCCCT GTCCTGTGAG TCTCCCAGGC TGAGACCCAG CTGGAGGCCT TGGCCTGAGA
  CATGAGGCTC AGACGCAGGT TGCAAAGTGC CTCTCATCTG GAATTCTACT GAGCCCATTC
  CCTGGGGGCC CAGCCTGGTC CAGGCAGCTC TTCTGCTGAA CTGGCTGCTC CTTGGGTTAC
  CCACATTCCA GTACTGCGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37824561	NES08702945	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C		T	C	C	T
ss320622144	CHEV_2_173089449	CHEVERUD	SCREENING_POP	f	SNP							C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27615338					SNP	C	C	C	T	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37824561	NES08702945	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173105741 () rs orientation: forward

Symbol	Name	Function Class
Pmepa1	prostate transmembrane protein, androgen induced 1	Intron
Rr571914	regulatory region 571914	1717 bp distal
Rr571915	regulatory region 571915	within coordinates
Rr571916	regulatory region 571916	986 bp proximal
Rr571917	regulatory region 571917	1818 bp proximal
Tssr22050	transcription start site region 22050	1102 bp upstream
Tssr27982	transcription start site region 27982	1986 bp downstream