rs27614430 SNP Detail

Summary

• ID
  rs27614430
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:144287916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCACCTC CTCCATGGTA
  AAAGATGATG CCTTTCCGGG GGCCAGAGGA GGTTGCCTTG GGCTGAAACA GTCTCACAGG
  AATTGTGCCA AAATGCATGT TCTTCACCAA CACACCAAAG TTATTCTTTG ATACCAAGAG
  GTCTTGTATA AAGCAGAAAA AGCGGGGCAT GGGGCAAATT TTCATCTTCT CCAGTACATT
  Y
  CCCTGGGGAG ACAAAGAACA AAAGACCAGT TGGCTACAGT TCAAATCCAC TTTATAGCTA
  TTGCCCAGTT TTCTGTGTGG CTCAACTCAG GGCTGAACTA TCTCTCCTAA TTAGGTGGAA
  TTGTTTATGT AAGCAAGTGA GTGCCTGGTT GTGAAACGAG GGACATGAAG TAGAAGAGAA
  AAGTTATGCT TCACTGACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37800852	NES09127869	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27614430					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37800852	NES09127869	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144287916 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aadacl4fm2	AADACL4 family member 2			Coding-Synonymous
				Splice-Site
Rr604231	regulatory region 604231			1328 bp distal