rs27613840 SNP Detail

Summary

• ID
  rs27613840
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173635200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATATCCA GGTCTGTGGT
  CTGTACCCCT GAATACAGGC TAGACTAGAA GTGGCAGGGT CGTATGTGTC CATCCAAGAT
  AGAGCAACGG AGAAGGGCTG ACCTTCCCCT GTAATGTGGT GACAATACAG AGCCAGGTGG
  GTGTTTGTAG GAGAGCCATA CAGTGTTCAA GGGGCCACCC GGAAGTTAAA GGCTGATGTC
  R
  TAGCCATTCA AAGAGGGCCA GTCCTTGAGT CAGGAGTAGC ATGGGGAGAG AGATGACAGG
  AAGATACGGT GCCCACCCAA TAGAGAGCTT CTGCATTGGA GGCCTGCTGT GAGGGTCTGG
  GGGCTTCTTG GGCCTGCCTC TTGCAGAGGG GGGTGGGGCT GGAAGGAGAT AGGACGTTTC
  TCAGGAGTGT CAGGACTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37822658	NES08693917	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27613840					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37822658	NES08693917	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173635200 () rs orientation: forward

Symbol	Name	Function Class
Gm14371	predicted gene 14371	within coordinates
Gm75809	predicted gene, 75809	within coordinates
Rr572034	regulatory region 572034	644 bp distal
Rr572035	regulatory region 572035	1651 bp proximal