rs27613838 SNP Detail

Summary

• ID
  rs27613838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173635587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCAGGAC TGGATCCATC
  TGTGGGCCTC TGTCCAATGA AGAGCAGGCT CTGCCCATGG GGGTCTTGTT CCGTTTTGAA
  CAGCTCATAC TCTACATGTG GGAGCCTGAT GCCCAAGGGC AGGCACCCGT TGGTGGCTGT
  GACATCCCTC TCAGTATTTA CTGACCAGAA CCCTGGGCCA CCACAGCTGC TTGGCTTGGA
  R
  CAGTGGAGTA TGTCTGTAGT GACCTGGTCC ATGGGGGTCA CATGGACCCG AGTAACCTCA
  AACATCAGCT CAGTGCCACC GTGGACCCTG GGGGACGGGC TGCCTCTGGA GTAGTGGCCA
  GCTGCAAACA CCGTGAAGGT AGTCTGGCGG CAGGCAGGGT CAGAGAAATG ATGGTAGCAC
  CCTTCCCAGG AAAGTTGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37822656	NES08693919	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27613838					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37822656	NES08693919	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173635587 () rs orientation: forward

Symbol	Name	Function Class
Gm14371	predicted gene 14371	within coordinates
Gm75809	predicted gene, 75809	within coordinates
Rr572034	regulatory region 572034	1031 bp distal
Rr572035	regulatory region 572035	1264 bp proximal