rs27613836 SNP Detail

Summary

• ID
  rs27613836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173635966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCGCAGCG GCAGACCTGG CCGGGAAGGC AGCACAGGCG
  GGTGGTGCTG GTCGGGTGGT GCTGGTCGGA GCGGACAACA AGACTGCAAG CCAGGCAGGG
  Y
  GGAGTGTGGT GCTGCCGAAG TTGAAACAGA GTGGTCAGGC AGCAGGGAGA GCCAGGCATT
  AACCGGAATG GTCTCCCAGT ACAGGGCCCC AAGGCTAGTC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37822654	NES08724922	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27613836					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37822654	NES08724922	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173635966 () rs orientation: forward

Symbol	Name	Function Class
Gm14371	predicted gene 14371	within coordinates
Gm75809	predicted gene, 75809	within coordinates
Rr572034	regulatory region 572034	1410 bp distal
Rr572035	regulatory region 572035	885 bp proximal