rs27613833 SNP Detail

Summary

• ID
  rs27613833
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173636364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCTGCTCT AGACAGGAAG TTGCAAAGAT TCTCTAGGCT
  GAGGTCCTGA TGCCCCCCCA ACTCCCAGAC TCCCCGTAAA CACACACTTG CTGAAAGGAC
  R
  AGAAACCTAC TGACGTATCT AGGTGGGTTA GAAGAAGCCC TGCCCAGGTA GCCTGCCTGG
  CCTAGTGCTG GGGGTTTTGC TGAACCCCTC CTGCCACTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37822651	NES08693925	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	A	G	G	G	G	G	G
ss45343829	mCV22596838	ABI	CRAMUS_MOUSE	f	SNP		G	G						A
ss148336525	ENSMUSSNP4355887	ENSEMBL	ENSEMBL_Sanger	f	SNP			G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27613833					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37822651	NES08693925	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173636364 () rs orientation: forward

Symbol	Name	Function Class
Gm14371	predicted gene 14371	within coordinates
Gm75809	predicted gene, 75809	within coordinates
Rr572034	regulatory region 572034	1808 bp distal
Rr572035	regulatory region 572035	487 bp proximal