rs27613358 SNP Detail

Summary

• ID
  rs27613358
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139341474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCT GCTATGGGGT CTCTCAGGGA
  Y
  TGCATAGTTA AGATCCTGGG TGCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J
ss37792980	NES09136627	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C				T	T
ss45584202	mCV22729075	ABI	CRAMUS_MOUSE	f	SNP		T	T			T	C
ss147675984	ENSMUSSNP1057286	ENSEMBL	ENSEMBL_Sanger	f	SNP			T				C
ss321382813	CHEV_4_139170078	CHEVERUD	SCREENING_POP	f	SNP								C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J
rs27613358					SNP	T	T	T	T	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37792980	NES09136627	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139341474 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15172	CpG island 15172	669 bp proximal
Gm21969	predicted gene 21969	Intron
Iffo2	intermediate filament family orphan 2	Intron
Rr603260	regulatory region 603260	422 bp proximal
Rr603261	regulatory region 603261	1915 bp proximal