rs27613356 SNP Detail

Summary

• ID
  rs27613356
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139341996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGA GATGCTGAGC ACACGGAAGT
  Y
  CCCGGAATCA GTTGGGGCTT AGTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37792978	NES09136631	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	T	C	T	C	T	T		C	C	T
ss147676001	ENSMUSSNP2906278	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss321382815	CHEV_4_139170600	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27613356					SNP	C	C	C	T	T	C	T	C	T	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37792978	NES09136631	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139341996 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15172	CpG island 15172	147 bp proximal
Cpgi15173	CpG island 15173	1649 bp proximal
Gm21969	predicted gene 21969	Intron
Iffo2	intermediate filament family orphan 2	Intron
Rr398637	regulatory region 398637	1993 bp upstream
Rr603260	regulatory region 603260	79 bp distal
Rr603261	regulatory region 603261	1393 bp proximal