rs27613354 SNP Detail

Summary

• ID
  rs27613354
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139342298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCGA CACCTTCATG AGTATATGGA
  R
  ATGTGCAGCA TGAAGCGAGG CCTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37792976	NES09136635	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	G	A	G	G	G	G		A	A	G
ss45615380	mCV22729271	ABI	CRAMUS_MOUSE	f	SNP		A	A						G
ss147676014	ENSMUSSNP2638890	ENSEMBL	ENSEMBL_Sanger	f	SNP			A						G
ss321382818	CHEV_4_139170902	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27613354					SNP	A	A	A	G	G	A	G	G	G	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37792976	NES09136635	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139342298 () rs orientation: forward

Symbol	Name	Function Class
Gm21969	predicted gene 21969	Coding-Synonymous
Iffo2	intermediate filament family orphan 2	Coding-Synonymous
Rr398637	regulatory region 398637	1691 bp upstream
Rr603260	regulatory region 603260	381 bp distal
Rr603261	regulatory region 603261	1091 bp proximal