rs27613353 SNP Detail

Summary

• ID
  rs27613353
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139342609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTTCCAT GGTGGGTGGG
  GGCTTTACAG AGAGACATTC GGGGCTGCCT CGTGCAGCTT CACTACATTT TAATTTTTCC
  GACCCTCTGT CTGACCTCCT ATCCATCCAC CTCCCCCCAA GCCCCCATCA CGAGCATACC
  TACTATGTGC TAGGTGACTA ATGTATAGAC AAAACAAAAC AAATAATACC ACCACCATCA
  Y
  GATCGATCGG TTCAACAGAG AGTTGTCAAA GGCCCGCTGT GTGCTAGAGC GTCTGAGTTA
  GTGTTCTGTT GCTGTGATGA ACACTATGAC GGAAAGCAGT TGGGAAGGAA AGGGCTTACT
  TGGCTTAGAC TTCCACATCG TAGTCCGTTG TTGAGGGAAG TCAGGGAAGG AAGCTGGAAC
  CAGGAAATGG TGCAGAGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37792975	NES09136636	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27613353					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37792975	NES09136636	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139342609 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15172	CpG island 15172			219 bp distal
Cpgi15173	CpG island 15173			1036 bp proximal
Gm21969	predicted gene 21969			Intron
Iffo2	intermediate filament family orphan 2			Intron
				mRNA-UTR
Rr398637	regulatory region 398637			1380 bp upstream
Rr603260	regulatory region 603260			692 bp distal
Rr603261	regulatory region 603261			780 bp proximal