rs27613352 SNP Detail

Summary

• ID
  rs27613352
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139342700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTT GCTGTGATGA ACACTATGAC
  S
  GAAAGCAGTT GGGAAGGAAA GGGCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37792974	NES09136637	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	C	G	C		C	C		G	G	C
ss45644866	mCV22729273	ABI	CRAMUS_MOUSE	f	SNP		G					G	C
ss147676025	ENSMUSSNP158276	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						C
ss321382820	CHEV_4_139171304	CHEVERUD	SCREENING_POP	f	SNP										C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27613352					SNP	G	G	C	C	G	C	G	C	C	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37792974	NES09136637	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139342700 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15172	CpG island 15172			310 bp distal
Cpgi15173	CpG island 15173			945 bp proximal
Gm21969	predicted gene 21969			Intron
Iffo2	intermediate filament family orphan 2			Intron
				mRNA-UTR
Rr398637	regulatory region 398637			1289 bp upstream
Rr603260	regulatory region 603260			783 bp distal
Rr603261	regulatory region 603261			689 bp proximal