rs27613229 SNP Detail

Summary

• ID
  rs27613229
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139362687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTGTCAG AGATCCCGAG
  GGTGTGGCAC CTCCTTAGAC CATGGGAGTG AGTGAGGCAG GAGCCTCAGA CCTCACAATA
  ACAGCAGGAT GGGCTGTCTG TAGCAGTGTG GACAGGACTT GGGGGGCCTT CTGCTGGTAG
  CTAGTGTCCT TCTGGTCCCC CCTGTGTGCC CCGCTGTGTA AGGCAGAAGA CAGCCCTTTA
  Y
  CTCTCTCTCC AGGCCTTGCT CAACAGAGCC ATCGATGCTG CCTTGGCTGC CAGGAAAGAG
  TGGGACCTGA AGCCCATGGC AGACCGGGCC CAGGTCTTCC TGAAGGCGGC AGATATGCTG
  AGTGGGCCCC GAAGGGCGGA AGTCCTTGCC AAGACCATGG TGGGACAGGT GAGGATGGAC
  AGGCCCCGTC AGGCTCTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37792849	NES09136113	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27613229					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37792849	NES09136113	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139362687 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aldh4a1	aldehyde dehydrogenase 4 family, member A1			Intron
				Noncoding-Transcript-Variant
Gm21969	predicted gene 21969			Intron
Rr603268	regulatory region 603268			937 bp proximal
Rr603269	regulatory region 603269			1190 bp proximal