rs27612453 SNP Detail

Summary

• ID
  rs27612453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:142244923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCAGCGA GCTGCCATCC
  CAATTAGAAG CCTGGATGGG CTCTGTGGTC GCTGGGGATC TCTGCAGATG TAGGATTGGT
  GGAGACTGAG TGAGCAATGA GTCTCAAGTT CACAGCCAAA GGGTAGTGGG CCTTATAAGC
  TAGGACCTCC CGGGGCCTCA GGCTTGTCTA GTCATGATGT AACTGATGCA AATGTGTGTT
  Y
  AGATTTATGC TGATCTACTT GCAATTCAAT TTACAACCGG TACAATCGCT GGGTAAAGTG
  ATATTTCTGG GGATCAGAGA AGTGTGAACA AAGCAGAAAT GATGGGGAAG GGGGTGGAGA
  GGGGAGGGGG CTCATGGCTG AAGACAAGGA GTGGAAGGAG GTGCTGGGAG CCTAGGGCAG
  GACCTGGGAG GGATGGAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37797974	NES09119946	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27612453					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37797974	NES09119946	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142244923 () rs orientation: forward

Symbol	Name	Function Class
Gm70299	predicted gene, 70299	within coordinates
Rr604088	regulatory region 604088	340 bp distal
Rr604089	regulatory region 604089	1690 bp proximal