rs27611696 SNP Detail

Summary

• ID
  rs27611696
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145189234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGAGGACTG TTTGGAGAAC CTGGAACCAA GGACTGACTT
  GATTTGTTAA ATAGGCACGT TGTCTTTTGT TCCAGGGTTT AATATTCAAC ATTAGGGATG
  R
  CTGAAGAGAT TGAAATGATT TAATTGTAAT CTCAAAAGTT ATTTTTTAAA AAAATGAACT
  AGTTCTTTTA TTTCTTCTCT GCCTAAGTTA TCAATGGAGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37798826	NES09115911	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27611696					SNP	G	A	A	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37798826	NES09115911	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145189234 () rs orientation: forward

Symbol	Name	Function Class
Gm65281	predicted gene, 65281	1540 bp upstream
Rr377358	regulatory region 377358	403 bp upstream
Rr604377	regulatory region 604377	1050 bp proximal
Rr604378	regulatory region 604378	1551 bp proximal
Smarca5-ps	SNF2 related chromatin remodeling ATPase 5, pseudogene	1634 bp upstream