rs27611679 SNP Detail

Summary

• ID
  rs27611679
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145191847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATACTTAGT TATAGATGAA GCTCACAGGA TAAAAAATGA
  AAAAATCTAA GTTGTCAGAA ATAGAGAATT CAAGACTACA AATCGGCTGT TGCTAACAGG
  K
  ACGCCTCTTC AGAACAACCT GCATGAGCTC TGGTCACTTC TAAACTTTTT GTTACCAGAT
  GTATGACTTT GATTCAGCTG ATGACTTTGA TTCCTGGTTT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37798809	NES09115858	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27611679					SNP	G	G	T	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37798809	NES09115858	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145191847 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15270	CpG island 15270	994 bp distal
Gm65281	predicted gene, 65281	within coordinates
Gm70672	predicted gene, 70672	1562 bp upstream
Rr377358	regulatory region 377358	490 bp downstream
Rr604377	regulatory region 604377	1063 bp distal
Rr604378	regulatory region 604378	876 bp distal
Smarca5-ps	SNF2 related chromatin remodeling ATPase 5, pseudogene	within coordinates