rs27611216 SNP Detail

Summary

• ID
  rs27611216
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:142843526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCAGAG GCCAGTGTTA
  ACCTTGGGAG CTGTGATTCC CACAACTGAT GGACACAAAT GTTCAACAGT GACTTCAAGA
  GAAGGCCGAG AGGAAAGCAC GTGTAGGCAG ACACTAGGTC ATGGGAGCAA AGTGAGGACC
  TTGGAGAGAG CAGGTGACGT AAAGGGACAG GAGCTCTCCA AGGCATGAGG GTGGCTGCTG
  R
  GTCTCTCTAC CTGGCTTTCA CCTGGCTCCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT GGCACAGATG ACATTGGGCC TCACACTGAT
  GCCTTACCTA TCTCTATAAA TTTGTGGCTC AGTTCACTGA CTGGCAATCA GTTCTGGAGC
  GGAGGTGGAG GGGAAGGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	MOLF/EiJ
ss37794942	NES09125565	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		A
ss45631538	mCV23737513	ABI	CRAMUS_MOUSE	f	SNP		A	G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	MOLF/EiJ
rs27611216					SNP	A	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37794942	NES09125565	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142843526 () rs orientation: forward

Symbol	Name	Function Class
Prdm2	PR domain containing 2, with ZNF domain	Intron
Rr604158	regulatory region 604158	1811 bp proximal