rs27611203 SNP Detail

Summary

• ID
  rs27611203
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:142846112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCTGGGG GCACAAAGGG
  GCGCCCAGAA CGCGCATCCT AAACAATAAG GAACAAATCC ACATCCGAGC TCTCCAACAT
  GCAGGTCCCT ACTCCCAAGA GTCAAATTCT CCAAGCACTT GCATCCCAGA GGGGTTCACT
  CACTGCCAGA GTCCTGCCCA GAACATGGGT CAAGGTGTCT GTTTTGAACA ACTCTGTGAA
  Y
  ACATCTGAAG ATTCAGACCT CTCCCACAGA CCCCACCCCC ATCCCACCTA GTGCTGCCTC
  TTACATTTCA GGGACATCAT CTCTGCAGGA ACCCTGCTAC CGCTTGAGCC AGCACAGGAA
  TGATCCCCCT GACTTTCTCC TCTCTACATC TACTTCCAGG TTCTTTTTTT TCCTCCAGTT
  GAGTGAAAAC ACACCATTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37794929	NES09125469	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27611203					SNP	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37794929	NES09125469	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142846112 () rs orientation: forward

Symbol	Name	Function Class
Prdm2	PR domain containing 2, with ZNF domain	Intron
Rr604158	regulatory region 604158	317 bp distal
Rr604159	regulatory region 604159	491 bp proximal