rs27609115 SNP Detail

Summary

• ID
  rs27609115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:142120144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCTATGT GATGACTTTG
  AAGCCATCCT GGGTTACAGC GTGTCTCCCT ATATAAAGAC AATAACAACA GCAAATAAAC
  AAACCACATC TCTCCAACTT ATTCATACAG AGGAACAAAG GGAATCAAGA GACACCTTGG
  CACCCCATTA CCAGCTACTC TCGGTGCCAC TTAGCAACTG ATCCTTCAAT AGTGTTAAAG
  Y
  GCCACTCAGT GCAGTTGGCT TTCACAGTGC GTTCCAGACC TCTGCTCATC TCAGATACAC
  TAGGCAATAG CTTTGTACTG AACGTTTGGG GCCAGAGTGA TCCAAGGCAA AGTTCCTGGT
  GATGAATGAG GCTTCAGGGC CAGGCTACAG AGCTCGCACT CCCCAGACCC TGCAACCTGC
  AGAATGAGTT TCTCTGTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37781945	NES09122792	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27609115					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37781945	NES09122792	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142120144 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42339	predicted gene, 42339			within coordinates
Kazn	kazrin, periplakin interacting protein			Intron
				Noncoding-Transcript-Variant
Rr604070	regulatory region 604070			1664 bp distal
Rr604071	regulatory region 604071			51 bp proximal
Rr604072	regulatory region 604072			288 bp proximal
Rr604073	regulatory region 604073			625 bp proximal