rs27609111 SNP Detail

Summary

• ID
  rs27609111
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:142120489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAGAGCT CGCACTCCCC
  AGACCCTGCA ACCTGCAGAA TGAGTTTCTC TGTGCTTCAG TTTCTGGACT CATGACTTGG
  GAATACAAAT ACTATGTTTG CTCACATCAG GGCCCAGGCA CAGCTGTCCA TGTCATTCCT
  CAAAGGACCT CTAGGGGGCA GGCTATCACA TTCCCAATTC CACTAAACAA AACTGCAAAA
  Y
  CACAAGGCTC TTTTCACCCA GAGAAAGCCC AGCACATACC CACACCTTTT TCTTTCTTCC
  TTGTAGGAAG AGTGGACAGC ATCAAAGCGC CAGGATTGGC AGCTGCTGAT AGAGACAGCC
  CCTTCCTCAA GATTCTGGGT GACCTTCTCA AGCAGTCTGA GGAAAGCTAG AAATTACCTG
  AAGGCCAGGT GTCTCTGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37781941	NES09122796	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27609111					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37781941	NES09122796	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142120489 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42339	predicted gene, 42339			within coordinates
Kazn	kazrin, periplakin interacting protein			Intron
				Noncoding-Transcript-Variant
Rr604071	regulatory region 604071			within coordinates
Rr604072	regulatory region 604072			36 bp distal
Rr604073	regulatory region 604073			280 bp proximal