rs27609100 SNP Detail

Summary

• ID
  rs27609100
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:142121749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACAGACG AGCAGAGATT
  TGAAGAGGCC TTGAGTGATG ATACTCCTCC CTCTTTTGCT TCCATGATGA CAGGCCCACG
  CTAAATTAAT GGAGGATGAG ATAGGTATAG AACAGGCACT CCAACAGGCA GACAGATGGT
  CCACAGGTAC TGAGCATGCT CAGTCATCAA TCAGCACAGC TGAGCTGGCC ACCCAAGACA
  R
  GCCAGTGATA CACATTTACC TCGAAGGACT GTGTACTAAT TGACATGTTG GCCATTGTTC
  CAGACATCCA AGGGAGCAGA GATTTACTGT GGCTCACAGT TCGGAGGTTT CTAGTCAGGG
  ACAGCAGGCT CTGCGGCTTC TGGGTTATGT AGAGCAGAAA ATCATGGTAG AGGCCGTGCA
  GCAGCAAAGG TGCACAGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37781930	NES09122725	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27609100					SNP	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37781930	NES09122725	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142121749 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42339	predicted gene, 42339			within coordinates
Kazn	kazrin, periplakin interacting protein			Intron
				Noncoding-Transcript-Variant
Rr604071	regulatory region 604071			1209 bp distal
Rr604072	regulatory region 604072			1296 bp distal
Rr604073	regulatory region 604073			959 bp distal