rs27608468 SNP Detail

Summary

• ID
  rs27608468
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134948220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCCCATC CCTGGCTGAG
  TCAGTTTTCT CTGCAGGTGT GGCTACTGGT AGGTCACCCA TGCTCCAGTG CACAGCCCCA
  CACCCAGGAA GATGTGAACA GAAAATTGTA AACAGTGGAT TGCTAAAAAC AAAACCTGAA
  GCTGGAAGTG TGGGGAGATG GGGTGGATCT GGTAGAGTTG GTGGGAGGAG AGGAGTGAAC
  W
  GGACCAAAGT ACATTGTGTG CATGTGTGAC AGTCTCAAAG AACGAAAAGA TCCTATCTTT
  TAAAAATTAT CCCTGTCAAC CTTAGCTTTT CCAATAAACA TAACTTGCTC TGTTACTTAC
  ATGTTTGAAC GGGCAGATTC AAGGCAGAAG TGTTAAATGT GTTATCAACA TTCCTGTTGT
  TAAAATACAT ACACAATTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37780892	NES09153731	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27608468					SNP	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37780892	NES09153731	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134948220 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	Intron
Rr601951	regulatory region 601951	954 bp distal
Rr601952	regulatory region 601952	1072 bp distal
Rr601953	regulatory region 601953	690 bp proximal