rs27608467 SNP Detail

Summary

• ID
  rs27608467
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134948318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAAATTG TAAACAGTGG
  ATTGCTAAAA ACAAAACCTG AAGCTGGAAG TGTGGGGAGA TGGGGTGGAT CTGGTAGAGT
  TGGTGGGAGG AGAGGAGTGA ACAGGACCAA AGTACATTGT GTGCATGTGT GACAGTCTCA
  AAGAACGAAA AGATCCTATC TTTTAAAAAT TATCCCTGTC AACCTTAGCT TTTCCAATAA
  R
  CATAACTTGC TCTGTTACTT ACATGTTTGA ACGGGCAGAT TCAAGGCAGA AGTGTTAAAT
  GTGTTATCAA CATTCCTGTT GTTAAAATAC ATACACAATT GAGCGAGGGT ATAGCTCAGT
  GTTAGAGCTC TCAGCTAGTA CGTGAGAAAC TCTGGGTGGA TAGTTTAATT TTGAGATATG
  GTCTCACAGC ATCACCTTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37780891	NES09153733	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27608467					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37780891	NES09153733	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134948318 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	Intron
Rr601951	regulatory region 601951	1052 bp distal
Rr601952	regulatory region 601952	1170 bp distal
Rr601953	regulatory region 601953	592 bp proximal