rs27608462 SNP Detail

Summary

• ID
  rs27608462
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134948539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGTTTGA ACGGGCAGAT
  TCAAGGCAGA AGTGTTAAAT GTGTTATCAA CATTCCTGTT GTTAAAATAC ATACACAATT
  GAGCGAGGGT ATAGCTCAGT GTTAGAGCTC TCAGCTAGTA CGTGAGAAAC TCTGGGTGGA
  TAGTTTAATT TTGAGATATG GTCTCACAGC ATCACCTTAG CCGCCCTTTG CCCCAGTAGC
  R
  GTGGGATTAA AGATGCGCAC CACACGCCTG GTTCACTTCT CTCTTAGTGC TTAGGTTACA
  TAAACCTACT CCCGGCCAAC TTGTACCTGT TACCAAAAGA TAGACCGATC CATTTATTGA
  TCTATCGATT GATTGATCTA TCCGTCTTCT GTCACCTATC CCCTCTCCCT CTCCCTCCTC
  CTCTGTCTCT GTCTCTGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37780886	NES09153740	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27608462					SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37780886	NES09153740	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134948539 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	Intron
Rr601951	regulatory region 601951	1273 bp distal
Rr601952	regulatory region 601952	1391 bp distal
Rr601953	regulatory region 601953	371 bp proximal