About   Help   FAQ
rs27608462 SNP Detail
Summary
  • ID
    rs27608462
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:134948539 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACATGTTTGA ACGGGCAGAT
    TCAAGGCAGA AGTGTTAAAT GTGTTATCAA CATTCCTGTT GTTAAAATAC ATACACAATT
    GAGCGAGGGT ATAGCTCAGT GTTAGAGCTC TCAGCTAGTA CGTGAGAAAC TCTGGGTGGA
    TAGTTTAATT TTGAGATATG GTCTCACAGC ATCACCTTAG CCGCCCTTTG CCCCAGTAGC
    R
    GTGGGATTAA AGATGCGCAC CACACGCCTG GTTCACTTCT CTCTTAGTGC TTAGGTTACA
    TAAACCTACT CCCGGCCAAC TTGTACCTGT TACCAAAAGA TAGACCGATC CATTTATTGA
    TCTATCGATT GATTGATCTA TCCGTCTTCT GTCACCTATC CCCTCTCCCT CTCCCTCCTC
    CTCTGTCTCT GTCTCTGTCT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
ss37780886 NES09153740 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G A A G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
rs27608462 SNP G G G G G G G G G A A G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37780886 NES09153740 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:134948539 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Clic4 chloride intracellular channel 4 Intron
Rr601951 regulatory region 601951 1273 bp distal
Rr601952 regulatory region 601952 1391 bp distal
Rr601953 regulatory region 601953 371 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/18/2025
MGI 6.24
The Jackson Laboratory