rs27608460 SNP Detail

Summary

• ID
  rs27608460
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134948758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATCTATCGA TTGATTGATC TATCCGTCTT CTGTCACCTA
  TCCCCTCTCC CTCTCCCTCC TCCTCTGTCT CTGTCTCTGT CTCTGTCTCT TTCTCACAGT
  K
  CCCTTTAGTT TATTCACTAA AGCCTATTGG TTTACGGTGT ACTTCAATCT AAGCACTGGC
  CCTGACCCAT GTTCAGGTGG CTAATTTGTA TCTAGACACC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37780884	NES09153743	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27608460					SNP	G	T	T	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37780884	NES09153743	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134948758 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	Intron
Rr601951	regulatory region 601951	1492 bp distal
Rr601952	regulatory region 601952	1610 bp distal
Rr601953	regulatory region 601953	152 bp proximal