rs27608457 SNP Detail

Summary

• ID
  rs27608457
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134948879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACC TAAGCCCAGA GGGTCTTTAA
  R
  ATATTCAGCT ACATTGGATT TTATA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37780881	NES09153749	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A	G	A	G		G	A	G		G
ss147541737	ENSMUSSNP3967276	ENSEMBL	ENSEMBL_Sanger	f	SNP	G					A
ss321351259	CHEV_4_134777483	CHEVERUD	SCREENING_POP	f	SNP								G				G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27608457					SNP	G	G	A	A	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37780881	NES09153749	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134948879 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	Intron
Rr601951	regulatory region 601951	1613 bp distal
Rr601952	regulatory region 601952	1731 bp distal
Rr601953	regulatory region 601953	31 bp proximal