rs27607759 SNP Detail

Summary

• ID
  rs27607759
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141947591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTCCCCA CTCCTTTCTT
  TCCTCTGTCC ACTTCCCACC AAAGAAAACC CGATGGAACT ATGGGAAGGA TACAGCAGAG
  GAGGCACTGT CACCCCACCA AGCAGTGGCC CAGACCTTCA ACACACACAG CTCACGGCAA
  ACTGGACCCA CCACCAGAGC CAGGTCAGCC AGCCCTGGCT TGCTGCTGCA GAGACCAAGC
  Y
  GGCACCCCGA GCCTCAGTTT CCTCTCCAGC TGCCTCTGGC ATCCATGGAG CCGATGCAAA
  CCCCTGCCAC TGTCAGAGCG GGCTTGTTCT GACTAGCTTT GAGGTGCAAA AGCCAGGCTT
  CCATTCCTAT TGTACAAACA GATAAACTGA GACCCAGAGA AAGGGTTTCG ATGGATCCAT
  TCATTACCTT GACTGGAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37782784	NES09127765	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27607759					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37782784	NES09127765	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141947591 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kazn	kazrin, periplakin interacting protein			Intron
				Noncoding-Transcript-Variant
Rr604032	regulatory region 604032			629 bp proximal