rs27607748 SNP Detail

Summary

• ID
  rs27607748
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141949260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCTAGCC AATCAAGTTA
  ATTGAAAAAT TACATTGGGT TGAGAAGAAG CAGGCCTCGC TGAGGCAGAC AGGCTCTCTG
  GAATCCTACT GGTACCCAGC AGGTCTGGAT TTTAACAGTC TACAGTCCAG GAAGGGTAGA
  AGACCTGGGA CGCTCTGGGC CTCCTAGGAG TTTTGTGGCT CCAGGGCTCT CTGCTAGGCA
  S
  ACGGCCAGAG AAACTTCCAG TCCCAGACGG GAGCTGTAAC TAAGTTGAGC AGAGAACCTG
  CTTGGGTTCA GTCTCCTGCA CACTGCATAA ACTGGGTATG GAAAAGCGTA ACTACAATTC
  CAGCAGGAGA GGTGGAGGCA GGAGAATTAC CCTTCAGTGA GGAAATGAAG GCATGAAGAA
  TAAAAGCCTA GCCCAAGAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37782773	NES09127737	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	G	C	C	C		G	C	C	C		C
ss321393900	CHEV_4_141777864	CHEVERUD	SCREENING_POP	f	SNP										G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27607748					SNP	C	C	G	C	C	G	C	C	C	G	G	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37782773	NES09127737	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141949260 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kazn	kazrin, periplakin interacting protein			Intron
				Noncoding-Transcript-Variant
Rr604032	regulatory region 604032			within coordinates
Rr604033	regulatory region 604033			1890 bp proximal