rs27607745 SNP Detail

Summary

• ID
  rs27607745
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141949426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTTTTGT GGCTCCAGGG
  CTCTCTGCTA GGCACACGGC CAGAGAAACT TCCAGTCCCA GACGGGAGCT GTAACTAAGT
  TGAGCAGAGA ACCTGCTTGG GTTCAGTCTC CTGCACACTG CATAAACTGG GTATGGAAAA
  GCGTAACTAC AATTCCAGCA GGAGAGGTGG AGGCAGGAGA ATTACCCTTC AGTGAGGAAA
  K
  GAAGGCATGA AGAATAAAAG CCTAGCCCAA GAGTGCAGGC CAATTAGCGT GGGTCTTTGG
  TCTTGTTCAC CTGGCTGCCA GATTAGTCCC CACCCCCTGA CTCCCACGCA TCACTACATC
  CTGGGGTGCT ATTCTGATTC TGGGGTGGGC CACCCCAACA CCCAGTCCTA GTAAATATAA
  CTGCAAACGA AGCCTGAGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37782770	NES09127715	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	G	G	T	T	T		G	T	T	T		T
ss321393904	CHEV_4_141778030	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27607745					SNP	T	T	G	T	T	G	G	T	T	T	G	G	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37782770	NES09127715	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141949426 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kazn	kazrin, periplakin interacting protein			Intron
				Noncoding-Transcript-Variant
Rr604032	regulatory region 604032			within coordinates
Rr604033	regulatory region 604033			1724 bp proximal