rs27607744 SNP Detail

Summary

• ID
  rs27607744
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141949610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTCAGTG AGGAAATGAA
  GGCATGAAGA ATAAAAGCCT AGCCCAAGAG TGCAGGCCAA TTAGCGTGGG TCTTTGGTCT
  TGTTCACCTG GCTGCCAGAT TAGTCCCCAC CCCCTGACTC CCACGCATCA CTACATCCTG
  GGGTGCTATT CTGATTCTGG GGTGGGCCAC CCCAACACCC AGTCCTAGTA AATATAACTG
  S
  AAACGAAGCC TGAGATGTAG ACCAGCCTCA AGACGAGTGA AAGGCTGCCT GTACTGCACA
  GGGCAAGATG GTGTCTTTAT GCCCAGGAGG CTCTGCAAAG GGTCCAGACT ACACTACTCA
  GTCCCAATAT ACGGTGGCCT TTAACTTGGT CTTCAAAGAG CCCTCACATC TATTATGTTT
  ATTATCTCAA CCTAGTGGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37782769	NES09127716	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	C	G		G	C	C	C		G	C	G	C		C
ss45719613	mCV24621910	ABI	CRAMUS_MOUSE	f	SNP		C	G					C		C
ss147751650	ENSMUSSNP4982334	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G							C
ss321393905	CHEV_4_141778214	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27607744					SNP	C	C	G	G	G	C	G	C	G	C	C	C	G	G	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37782769	NES09127716	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141949610 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kazn	kazrin, periplakin interacting protein			Intron
				Noncoding-Transcript-Variant
Rr604032	regulatory region 604032			within coordinates
Rr604033	regulatory region 604033			1540 bp proximal