rs27607704 SNP Detail

Summary

• ID
  rs27607704
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141955359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATAAAGGG AGGGTCCCCT
  CTAGATCACT CCCACGGGGC AGACACTTGT ACCCACACCT GAAGAACCCC GGGAGGAAGA
  GCGTACTGTA GGGACAGCCT TACGTCTGCT CCAGAAGCCA GAGTGAGCAT CTTATCTTCT
  GCCTTTGAGG TTTCTGCCTT TGACAGGGAA CATCCAGAAT GCAAGCTTGG CTCTTTCTCA
  R
  CTGCCAGAGA AGCAGAAGGA CCTCACAGGA GCCCAAGGAA GACATAGATG GAGATGCCTG
  CCTGCCTGAA CTTTGGGGAC TTTAATGGAA TACTGTGGGA ATCTGACCCA CAAAAGACTG
  CCCTAGATCA GCAATGACTC CCAGCCCCGG CCAAACTCTA GGACTCCCAC AGATGCAAGA
  AGTATTCATG ATGTGTATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37782729	NES09127603	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27607704					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37782729	NES09127603	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141955359 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kazn	kazrin, periplakin interacting protein			Intron
				Noncoding-Transcript-Variant
Rr604034	regulatory region 604034			1646 bp distal
Rr604035	regulatory region 604035			1023 bp proximal