rs27606150 SNP Detail

Summary

• ID
  rs27606150
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172599213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGGGTGG GGCTGCAGTG
  TTTCCTGGTG TGTTAACTAT CAGGATTCAA TTTGTCTTGT GACAAAGAAG AGGGAGTCTG
  TTTGAAAAGG TGACCCCCCA CCCCCACCCA TAGGATGACC ACTGCCCAGG CGTGAGACTG
  GGACCAGAGA CCCCTGAGAG TGTGTGCAGG GGTTGGGGGT GGGGAGCTTT GAAATCTGGA
  Y
  CTGTGACTCA GGTAACTTTG GCTCCTCCCC CGCCTGGGGC GGGAACTCAG TAGTTCCCAA
  ATGTGATCAG ATCTGAATTC TCAGGGCTGG ATGGGGAGCC TCTCCAGCCT CTGTGTTTCT
  GTCTTCCTTA GAGCTTGCCC TTGATTTCCT GGGTCCTTCA TTCTCTAACC AGAAGGCAGG
  CGGCTGACAG ACTGAATGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37826669	NES08714010	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27606150					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37826669	NES08714010	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172599213 () rs orientation: forward

Symbol	Name	Function Class
Gm74644	predicted gene, 74644	1100 bp downstream
Rr571720	regulatory region 571720	226 bp distal
Rr571721	regulatory region 571721	within coordinates
Rr571722	regulatory region 571722	800 bp proximal
Rr571723	regulatory region 571723	1283 bp proximal