rs27606147 SNP Detail

Summary

• ID
  rs27606147
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172599503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGGGAGC CTCTCCAGCC
  TCTGTGTTTC TGTCTTCCTT AGAGCTTGCC CTTGATTTCC TGGGTCCTTC ATTCTCTAAC
  CAGAAGGCAG GCGGCTGACA GACTGAATGG AACCCCAGGA CCTGTCTGTA AGCTGTATGG
  ATGGCTATGT ATTGATGAGC CAATTAATGA CAGAAAAGGG CTGAGTCCCG AGAATCTGCT
  Y
  CCTTCAGTGG TGACTTGGTC ATCGTGCACC AACCATTATC AGCACTTTCT CAATCTGAGG
  GCGTGACAGA CAGTGGGCCA AGGGGCTTAT GGGAAACAAG CTGCATGCTT CTCTCTTGTA
  GGACAAGCTG GATGGCCAGC ATTATCTAGG ATGTTGCCAC AGTGCTCTGG GGTGCTAATC
  TAATGGCACA CTGAAAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	PWD/PhJ	WSB/EiJ
ss37826666	NES08714012	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	PWD/PhJ	WSB/EiJ
rs27606147					SNP	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37826666	NES08714012	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172599503 () rs orientation: forward

Symbol	Name	Function Class
Gm74644	predicted gene, 74644	810 bp downstream
Rr571720	regulatory region 571720	516 bp distal
Rr571721	regulatory region 571721	within coordinates
Rr571722	regulatory region 571722	510 bp proximal
Rr571723	regulatory region 571723	993 bp proximal