rs27606146 SNP Detail

Summary

• ID
  rs27606146
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172599526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCC TTCAGTGGTG ACTTGGTCAT
  Y
  GTGCACCAAC CATTATCAGC ACTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37826665	NES08714013	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T		T	T	T	C		C
ss320620083	CHEV_2_172583234	CHEVERUD	SCREENING_POP	f	SNP								T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27606146					SNP	T	T	T	T	C	T	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37826665	NES08714013	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172599526 () rs orientation: forward

Symbol	Name	Function Class
Gm74644	predicted gene, 74644	787 bp downstream
Rr571720	regulatory region 571720	539 bp distal
Rr571721	regulatory region 571721	within coordinates
Rr571722	regulatory region 571722	487 bp proximal
Rr571723	regulatory region 571723	970 bp proximal