rs27606143 SNP Detail

Summary

• ID
  rs27606143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172599755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAG ACCAATCTGT TACCCTGAGC
  Y
  TTCCACATCC ATCAGACCCC AGAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	SM/J	WSB/EiJ
ss37826662	NES08714016	PERLEGEN	MM_PANEL2	f	SNP			T	C	T	C			C
ss148322315	ENSMUSSNP5419730	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320620089	CHEV_2_172583463	CHEVERUD	SCREENING_POP	f	SNP							T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	SM/J	WSB/EiJ
rs27606143					SNP	T	T	T	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37826662	NES08714016	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172599755 () rs orientation: forward

Symbol	Name	Function Class
Gm74644	predicted gene, 74644	558 bp downstream
Rr571720	regulatory region 571720	768 bp distal
Rr571721	regulatory region 571721	125 bp distal
Rr571722	regulatory region 571722	258 bp proximal
Rr571723	regulatory region 571723	741 bp proximal