rs27606139 SNP Detail

Summary

• ID
  rs27606139
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172600341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCTACCC CATACCTCAG
  AGCTGAGATT AGAGGCATAC TCTGGTTTCC ATGTCAGAGC CTGGGATCCA CACTCAGGTT
  CTCGAGCTTA GGGAAAAGGA TTTTCCCTGC AGAGCAACTC CCCAGCCCTG GTTTTCTTTG
  CACATTTGCA GAATGACCTG AAGGGACGTG TGAAAAGTCG ACTTTGTCTT TAATTTCTAA
  R
  GCTCTCAGCC TCCAATGGGA GACCTGTGTC CTCTCCCACT TGTGGGAGAC CCAGCAAAGC
  CATCCCATTC CAAGATGTGA ATGGACCTTG GAGCCACTCC CCACCCCCAC CACTCCCAAG
  CACAGCCATT CAGTGCCTCT CCCTGGGCAG GGGAACGCTG CCCTCTTCTG GTCCAAGCGG
  ACAGGCACGG CCAAGGCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37826658	NES08713937	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27606139					SNP	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37826658	NES08713937	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172600341 () rs orientation: forward

Symbol	Name	Function Class
Gm74644	predicted gene, 74644	within coordinates
Rr571720	regulatory region 571720	1354 bp distal
Rr571721	regulatory region 571721	711 bp distal
Rr571722	regulatory region 571722	within coordinates
Rr571723	regulatory region 571723	155 bp proximal