rs27606136 SNP Detail

Summary

• ID
  rs27606136
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172601071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAGCACC CAGCTGTCTG
  GTCCAGGTCT CTTCTTTGAG AAGCTGCGTG AGACAGGACA TCTTGGCCCA GCCTGCTTCC
  GCTCCTCCCC ACTGCAGAGT AGAGTGGCTT TTCTGACTGG CTTCCAGGGA GCCTGTCTGA
  AGGGCAGCTG TGAGGAGCGG AGGGAGAGAA AGTGGCGTAG GGCTTCCCTG GGACTTGTGA
  Y
  CCTGATTTGG CTTGAGCTAA AGCCAGAAAG TGCTTGCCTG AGAAATCCAG GTCCTACCTC
  CCAAAGATCA GATAGACACC AACGTGGGTT GGAGCACCAA AGGTCCCATG GGACTGGGGT
  AAGAACATGC GAGCTGACAG GCCGAACGAC ATGGTGGGGA AGGGCATGGG GAACAGACAT
  GGGGATCTGG AGGGAAAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37826655	NES08713940	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27606136					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37826655	NES08713940	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172601071 () rs orientation: forward

Symbol	Name	Function Class
Gm74644	predicted gene, 74644	within coordinates
Rr571721	regulatory region 571721	1441 bp distal
Rr571722	regulatory region 571722	256 bp distal
Rr571723	regulatory region 571723	554 bp distal