rs27606135 SNP Detail

Summary

• ID
  rs27606135
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172601109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGCTGCG TGAGACAGGA
  CATCTTGGCC CAGCCTGCTT CCGCTCCTCC CCACTGCAGA GTAGAGTGGC TTTTCTGACT
  GGCTTCCAGG GAGCCTGTCT GAAGGGCAGC TGTGAGGAGC GGAGGGAGAG AAAGTGGCGT
  AGGGCTTCCC TGGGACTTGT GACCCTGATT TGGCTTGAGC TAAAGCCAGA AAGTGCTTGC
  M
  TGAGAAATCC AGGTCCTACC TCCCAAAGAT CAGATAGACA CCAACGTGGG TTGGAGCACC
  AAAGGTCCCA TGGGACTGGG GTAAGAACAT GCGAGCTGAC AGGCCGAACG ACATGGTGGG
  GAAGGGCATG GGGAACAGAC ATGGGGATCT GGAGGGAAAG GGCCATGCGA TCCGGTCGTG
  TCTGTTCTCC TCAGCTCTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37826654	NES08713941	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27606135					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37826654	NES08713941	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172601109 () rs orientation: forward

Symbol	Name	Function Class
Gm74644	predicted gene, 74644	within coordinates
Rr571721	regulatory region 571721	1479 bp distal
Rr571722	regulatory region 571722	294 bp distal
Rr571723	regulatory region 571723	592 bp distal