rs27604815 SNP Detail

Summary

• ID
  rs27604815
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135242768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGTGGCT TTCCCTGAAA
  GGAAAATGAT TTTTAACACT TGCTTCATAT AACTGGGTTG TTCAAATCAT TGGGAATTTG
  GATGAAAAAA AAACAAAAAA CAAAATACAA ACAACCCTAG GAGTACAATT AGATGGCTCT
  GCCAAAGCCA ATGGCCAGAG CTGGATTGCT GAGATCCACG TGGTAGGAGA GAGCTGACCT
  Y
  TGACCTCCAC ATTCTCTACA CTGGACTCAG GGCATAGATA TTACTCCCTC ACAGTAAGGA
  GAGAGACAGA GAAACAGAGA GACACACAGA AAGACAGACA GACAGACACA TGCACACACA
  CACATGCACA CAGAGAGACA GAGATAGAGA CAGACAGACA GACAGACACA GTGACAGAGA
  GGCAGTAAAG AGAGAGACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37779842	NES09143351	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27604815					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37779842	NES09143351	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135242768 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr602052	regulatory region 602052			1256 bp distal
Rr602053	regulatory region 602053			1024 bp proximal
Rr602054	regulatory region 602054			1650 bp proximal
Stpg1	sperm tail PG rich repeat containing 1			Intron
				Noncoding-Transcript-Variant