rs27604804 SNP Detail

Summary

• ID
  rs27604804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135243884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCAGGAG CAAACTGACT
  TTGGAGTGAA GGCTCATGGT CTCGGAGCCC TCAGCAAAGT CACAGGATAG CCAGGTCTTT
  AGCTCCGCGT CAGGAGAAAG ACCCCAAAGC AACCATCCAG GTGCCACGTC ACAATGCCCC
  AGCATTGGCC ACAGGCCTGG GGACCTAATC CTGACTCAGC CGTGGAGCCT GAATGTGACC
  Y
  CAAGCACGCC ACCCTTCAAC ATACCAGTTG CCTCAGAGAC TCCCTGGAGG CTCTGAGCGA
  ATTGCAGTGA GAAAGACTTT GAAATTGCTG AGCAGTGTAA ACAAGCAGGA GCTAGCTAGC
  TCTGTCAGTA CCAGAGTCAC CCTTCAGACT GCCCAAAGCG CCTGGCTTCT CTCTGAGAAC
  TCCTCTGGCC GACTGTACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37779831	NES09143316	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27604804					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37779831	NES09143316	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135243884 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr602053	regulatory region 602053			within coordinates
Rr602054	regulatory region 602054			534 bp proximal
Rr602055	regulatory region 602055			1351 bp proximal
Stpg1	sperm tail PG rich repeat containing 1			Intron
				Noncoding-Transcript-Variant