rs27604527 SNP Detail

Summary

• ID
  rs27604527
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135795643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTTCTTC CAGAGGACCT
  AGGCTCGGTT CCCATCACTT ACATGGTGGT TCACAACAAT CTCTAACTCC AGTTCCTGGA
  GGATTCCTTG TCCTCTTTTG GCCTCCTCAG GCATTAGGCT ATTAATAAAC AATCCCTTAT
  TAATTTGTCT ACTATTTTCT ATTAATCTTT TAAAAATTTC TTTTTACACT TATTCATGTG
  Y
  GGTATACATG TGTTTCTGGA CACATGCATG CTGTGCATGT GTGTAGAGGT CAGAGGACAG
  TTTTTGGAAG TGGGTTTTCT CTTTCCACCG TGTAGGTCCA GGGGATGGAC CTCAATGCCA
  GGCTTGGTGG AAGGAAGCCT TACATGCTGA GCTGTGTGTC CAGACCCTCC AGTGGTTTTC
  CTATTAACTA TCTACTATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37777862	NES09149788	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C		C	T
ss321353923	CHEV_4_135624247	CHEVERUD	SCREENING_POP	f	SNP							T			C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27604527					SNP	C	C	C	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777862	NES09149788	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135795643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15093	CpG island 15093	1658 bp proximal
Rr602257	regulatory region 602257	1496 bp proximal
Rr602258	regulatory region 602258	1780 bp proximal