rs27604526 SNP Detail

Summary

• ID
  rs27604526
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135797508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGACT TGTTCGTTTG CTGCAGCAAG
  R
  AAGTCAGAGA GCCCAAGCTC TGGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37777861	NES09149746	PERLEGEN	MM_PANEL2	f	SNP		G	G	A	A	G	A		A	G		G
ss147557366	ENSMUSSNP5631276	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G					A
ss321353925	CHEV_4_135626112	CHEVERUD	SCREENING_POP	f	SNP								G			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27604526					SNP	G	G	G	A	A	G	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777861	NES09149746	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135797508 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15093	CpG island 15093	within coordinates
Cpgi15094	CpG island 15094	1070 bp proximal
Rr367750	regulatory region 367750	1288 bp upstream
Rr602257	regulatory region 602257	within coordinates
Rr602258	regulatory region 602258	64 bp distal
Rr602259	regulatory region 602259	556 bp proximal
Rr602260	regulatory region 602260	1490 bp proximal