rs27604458 SNP Detail

Summary

• ID
  rs27604458
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135836038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTATATTC CCTAATGAGG
  ACAAAGCTGT TGGTTTTTGT TGTTGTTGTT TGTTTGTCTT TTTCGAGACA GGGTTTCTCT
  GTATAGCTCT GGCTGTCCTG GAACTCACTT TGTAGACCAG GGTGACCTCG AACTCAGAAA
  TCTGCCTGCC TCTGCCTCCT GAGTGCTGGG ATTAAGGCGG TGCCACCACG CCGGGCTAAA
  W
  AGGGTCTTCT TGATGGCCCC CAGGTGCAGC AGGAACGGAA TAGCCTGGAC CCATGATAAC
  AAAGGCCAGG GCTTACCTCT ACTTCAAGGC TGACTTCTGA TGGTAGCACT CAGAAGCCAG
  AAACAGGAGT AGCTGGCTAG AAAAGCTGAG GTCTTTGAGG GTCATGGGAG ACGAGATGGT
  GGAGTGGACA TGCAAAGGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777792	NES09148324	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27604458					SNP	T	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777792	NES09148324	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135836038 () rs orientation: forward

Symbol	Name	Function Class
Rr602271	regulatory region 602271	1193 bp distal
Rr602272	regulatory region 602272	1393 bp distal
Rr602273	regulatory region 602273	1192 bp proximal