rs27604456 SNP Detail

Summary

• ID
  rs27604456
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135836079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTTGTTT GTTTGTCTTT
  TTCGAGACAG GGTTTCTCTG TATAGCTCTG GCTGTCCTGG AACTCACTTT GTAGACCAGG
  GTGACCTCGA ACTCAGAAAT CTGCCTGCCT CTGCCTCCTG AGTGCTGGGA TTAAGGCGGT
  GCCACCACGC CGGGCTAAAA AGGGTCTTCT TGATGGCCCC CAGGTGCAGC AGGAACGGAA
  Y
  AGCCTGGACC CATGATAACA AAGGCCAGGG CTTACCTCTA CTTCAAGGCT GACTTCTGAT
  GGTAGCACTC AGAAGCCAGA AACAGGAGTA GCTGGCTAGA AAAGCTGAGG TCTTTGAGGG
  TCATGGGAGA CGAGATGGTG GAGTGGACAT GCAAAGGCAG AGGAGGCAGA GGCAGAGGCA
  GAGGCAGAGG CAGAGGCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777790	NES09148326	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	C	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27604456					SNP	C	T	T	T	T	T	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777790	NES09148326	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135836079 () rs orientation: forward

Symbol	Name	Function Class
Rr602271	regulatory region 602271	1234 bp distal
Rr602272	regulatory region 602272	1434 bp distal
Rr602273	regulatory region 602273	1151 bp proximal